刘欣, 李姗, 刁瑶瑶, 张楠, 王雨佳. 羊齿天门冬叶绿体基因组特征与系统发育分析J. 内江师范学院学报, 2026, 41(2): 64-69. DOI: 10.13603/j.cnki.51-1621/z.2026.02.009
    引用本文: 刘欣, 李姗, 刁瑶瑶, 张楠, 王雨佳. 羊齿天门冬叶绿体基因组特征与系统发育分析J. 内江师范学院学报, 2026, 41(2): 64-69. DOI: 10.13603/j.cnki.51-1621/z.2026.02.009
    LIU Xin, LI Shan, DIAO Yaoyao, ZHANG Nan, WANG Yujia. Characterization and phylogenetic analysis of the chloroplast genome of Asparagus filicinusJ. Journal of Neijiang Normal University, 2026, 41(2): 64-69. DOI: 10.13603/j.cnki.51-1621/z.2026.02.009
    Citation: LIU Xin, LI Shan, DIAO Yaoyao, ZHANG Nan, WANG Yujia. Characterization and phylogenetic analysis of the chloroplast genome of Asparagus filicinusJ. Journal of Neijiang Normal University, 2026, 41(2): 64-69. DOI: 10.13603/j.cnki.51-1621/z.2026.02.009

    羊齿天门冬叶绿体基因组特征与系统发育分析

    Characterization and phylogenetic analysis of the chloroplast genome of Asparagus filicinus

    • 摘要: 羊齿天门冬(Asparagus filicinus Ham. ex D. Don)是一种兼具药用与观赏价值的濒危植物,其野生种群因生境破坏与过度采挖而急剧减少.本研究完成羊齿天门冬叶绿体基因组测序,组装得到全长156 600 bp的环状基因组(GC含量37.58%),包含大单拷贝区、小单拷贝区和反向重复区,分别为84 869 bp、18 623 bp和26 554 bp.注释显示有133个基因,含8个rRNA基因、38个tRNA基因和87个蛋白质编码基因.重复序列分析鉴定出34个长重复序列和49个SSR位点.密码子使用偏好性分析表明,亮氨酸密码子的使用频率最高,29个RSCU>1的密码子中有28个密码子以A/U结尾,仅1个密码子以G结尾.系统进化树结果显示,羊齿天门冬与石刁柏(A. officinalis L.)及龙须菜(A. schoberioides Kunth)亲缘关系最近,并支持天门冬属的单系性.本研究首次系统解析了羊齿天门冬叶绿体基因组特征,为天门冬属物种分类、遗传资源保护及系统发育研究提供了分子依据.

       

      Abstract: Asparagus filicinus Ham. ex D. Don, an endangered plant species with both medicinal and ornamental value, has suffered severe population declines in the wild due to habitat degradation and overexploitation. We sequenced and assembled the complete chloroplast genome of A. filicinus, obtaining a circular genome of 156 600 bp (GC content: 37.58%) comprising a large single-copy region, a small single-copy region, and two inverted repeats, measuring 84 869 bp, 18 623 bp, and 26 554 bp, respectively. Genome annotation identified 133 functional genes, including 87 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Repeat sequence analysis revealed 34 long repetitive sequences and 49 simple sequence repeat (SSR) loci. Codon usage bias analysis demonstrated that 28 out of 29 codons with relative synonymous codon usage (RSCU) >1 terminated with A/U, with leucine being the most frequently utilized amino acid. Phylogenetic analysis based on chloroplast genome data indicated that A. filicinus shares the closest evolutionary relationship with A. officinalis and A. schoberioides, while strongly supporting the monophyly of the genus Asparagus. This study provides the first systematic characterization of the chloroplast genome of A. filicinus, offering critical molecular insights for species classification, genetic resource conservation, and phylogenetic studies within the Asparagus genus.

       

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